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The Broad GDAC standardized data packages represent a frozen snapshot of all TCGA analysis data at a given time:

  • Cast in a form amenable to immediate algorithmic analysis (no additional data preparation required)
  • Which provides a consistent point of reference for analysis and citation by marker papers and users of TCGA data
  • Towards a formal definition of what constitutes a given tumor dataset
  • While minimizing redundant effort across centers and groups to download & prepare data for further analysis
  • And enhancing provenance and reproducibility
  • directly from the Broad: via the Open access links below (public data, no password required)
  • or from IGV (no password required)
  • or from the DCC, via the Protected access links below (requires protected data credentials)

Prior Data Runs

February 17, 2012

January 24, 2012

January 10, 2012

December 30, 2011

December 6, 2011

November 28, 2011

November 15, 2011

October 26, 2011

 Historical information ...

... on this effort is available in this presentation from the April 2011 TCGA meeting, which was refined in subsequent presentations on May 12th and May 19th, as well as the 2011 NCI TSM meeting and ongoing discussions with TCGA collaborators

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