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Update to Jan 22, 2018 entry:

  1. Genomic data for CPTAC3 downloaded to:  /xchip/gdac_data/cptac3/2018_02_02_genomic_data

  2. Only 2 cohorts (CRCC and UCEC, i.e. kidney and endometrial) have genomic data available so far
  3. The 3rd cohort (LUAD, lung) proteomic data not submitted by Broad yet, so WashU has apparently not processed the genomic either

Jan 22, 2018

  1. Brief review of items missed from last meeting
  2. Proteogenomic Data Commons Steering Committee: 
    1. Held 2nd advisory meeting call last Wed
  3. WashU/GDC workaround: summary of discussion & decisions from 1/19 call


  4. New science: degradome?