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Panel
titleJuly 2012 (2012_07_25)
  • New Samples:

    BCR+160(6846 total)
    Clinical+55(5633 total)
    Methylation+140(5465 total)
    mRNAseq+306(3460 total)
    miRseq+195(3976 total)
  • 32 new reports, for a total of 284 in this run
  • New Pipelines:
    • Correlate_Clinical_vs_CopyNumber_Focal
    • Correlate_Clinical_vs_CopyNumber_Arm
  • MutSig:
    • To address item (9) from 2012_06_23 Analysis Run Release Notes, input WIGs (from stddata__2012_07_25) updated to hg19 for:
      • BLCA
      • BRCA
      • CESC
      • KIRC
      • LUSC
      • LUAD
      • PRAD
      • STAD
      • UCEC
    • STAD failing due to memory exhaustion - ignoring for this release as there is no currently active AWG
    • COADREAD analysis is missing 102 samples. Please see explanation in our email archive.
  • Gistic2
    • Failed for PANCANCER due to memory exhaustion; ignored because it is the large 23-tumor cohort, not yet the 8-tumor cohort defined by AWG.

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