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Showing 1-10 of 145 for "Hailei Zhang" "hailei@broadinstitute.org"

  • Re: [GDAC-users] mRNAseq expression data TCGA

    : Mon, 27 Oct 2014 15:40:19 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Fabrice Sircoulomb <sircoulombf@gmail.com … >> >> On 21 Oct 2014, at 13:11, Hailei Zhang <hailei@broadinstitute.org> wrote: >> >> Hi Fabrice, >> >> This is not the common case. The mRNAseq was processed by UNC. I
  • Re: [GDAC-users] mRNAseq expression data TCGA

    : Tue, 21 Oct 2014 13:11:07 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Fabrice Sircoulomb <sircoulombf@gmail.com … with RNAseqV1 >> and RNAseqV2? >> Best, >> Fabrice >> >> On 20 Oct 2014, at 22:14, Hailei Zhang <hailei@broadinstitute.org> wrote: >> >> Hi Fabrice, >> >> You
  • Re: [GDAC-users] RSEM for STAD

    : Fri, 28 Mar 2014 13:42:55 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Michael Rooney <mrooney@mit.edu> Cc: gdac … , Mar 28, 2014 at 10:52 AM, Hailei Zhang <hailei@broadinstitute.org >> > wrote: >> >>> Hi Mike, >>> >>> The mRNAseq of STAD was processed by bcgsc not by UNC
  • Re: [GDAC-users] mRNAseq expression data TCGA

    : Tue, 21 Oct 2014 13:22:51 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Fabrice Sircoulomb <sircoulombf@gmail.com … of sample with >>> RNAseqV1 and RNAseqV2? >>> Best, >>> Fabrice >>> >>> On 20 Oct 2014, at 22:14, Hailei Zhang <hailei@broadinstitute.org> >>> wrote: >>> >>> Hi
  • Re: [GDAC-users] mRNAseq expression data TCGA

    : Wed, 26 Nov 2014 10:57:15 0500 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Fabrice Sircoulomb <sircoulombf@gmail.com … experiment? >> Regards, >> Fab >> >> On 21 Oct 2014, at 13:22, Hailei Zhang <hailei@broadinstitute.org> wrote= : >> >> You can also check the data set in the TCGA
  • Re: [GDAC-users] Re: UCEC analysis: visualization of full tables in report "Identification of putative miR direct targets by sequencing data"

    : Fri, 23 Oct 2015 15:06:19 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Gdacusers <gdacusers@broadinstitute.org … On Fri, Oct 23, 2015 at 1:59 PM, Hailei Zhang <hailei@broadinstitute.org> wrote: > Hi Laura, > > The files were deleted by accident. I will retrieve these file
  • Re: [GDAC-users] Re: [cga-webmaster] help

    : Tue, 8 Apr 2014 12:19:43 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Gordon Saksena <gsaksena@broadinstitute.org … thought they were there for > a few tumor types. > Gordon > > > On Tue, Apr 8, 2014 at 11:56 AM, Hailei Zhang <hailei@broadinstitute.org>= wrote: > >> Hi zachary
  • Re: [GDAC-users] mRNAseq expression data TCGA

    : Tue, 21 Oct 2014 10:37:08 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Fabrice Sircoulomb <sircoulombf@gmail.com … , Hailei Zhang <hailei@broadinstitute.org> wrote: > > Hi Fabrice, > > You are right. The RNAseq V2 is the RSEM values which is better than the > v1 RPKM values
  • Re: [GDAC-users] RSEM for STAD

    : Fri, 28 Mar 2014 18:25:58 0400 From: Michael Rooney <mrooney@MIT.EDU> ReplyTo: mrooney@mit.edu To: Hailei Zhang <hailei@broadinstitute.org> Cc: gdac … this rule. Thanks again, Mike On Fri, Mar 28, 2014 at 1:42 PM, Hailei Zhang <hailei@broadinstitute.org>wrote: > Hi Mike, > > Here is the paper about RSEM: > http
  • Re: [GDAC-users] Methylation data

    : Fri, 19 Jun 2015 10:46:28 0400 From: Hailei Zhang <hailei@broadinstitute.org> ReplyTo: hailei@broadinstitute.org To: Ahmadreza Niavarani <ar.niavarani@gmail.com … wondering what's the process performed on each dataset. > Thanks. > Reza > > > On Thu, Jun 18, 2015 at 10:42 PM, Hailei Zhang <hailei@broadinstitute.org= > > wrote