Re: [GDAC-users] Re: [cga-webmaster] help

Subject:   Re: [GDAC-users] Re: [cga-webmaster] help (find more)
From:   Hailei Zhang <hidden> (find more)
Date:   Apr 08, 2014 12:19

CIMP is hyper methylated CpG island probes.
 
 
 
 
On Tue, Apr 8, 2014 at 12:04 PM, Gordon Saksena <hidden
> wrote:
 
> Are CIMP calls found in the clinical data?  I thought they were there for
> a few tumor types.
> Gordon
>
>
> On Tue, Apr 8, 2014 at 11:56 AM, Hailei Zhang <hidden>wrote:
>
>> Hi zachary,
>>
>> The CIMP status was not provided in our website. You can download
>> methylation data from our website and figure it out by your self.  The
>> methylation platform was illunina HumanMethylation450.
>>
>> Best,
>> Hailei
>>
>>
>>
>> On Mon, Apr 7, 2014 at 12:14 PM, Gordon Saksena <
>> hidden> wrote:
>>
>>> The link you gave works for me.  Perhaps it works only internally?
>>> If the page works for you, but you are looking for different data than
>>> what is on the page, then see if you can find it from the main page,
>>> gdac.broadinstitute.org.
>>>
>>> Gordon
>>>
>>>
>>> On Mon, Apr 7, 2014 at 12:31 AM, 杨祖立 <hidden> wrote:
>>>
>>>> Hi,
>>>> We want to log in this website"
>>>> http://gdac.broadinstitute.org/runs/analyses__2014_01_15/reports/cancer/COAD/Correlate_Methylation_vs_mRNA/nozzle.html" and download some analysis data for colon cancer and colorectal cancer,
>>>> especially in methylation status and mRNA expression and CIMP status.
>>>> However, we can not. Could you help us and tell us how to get it.
>>>> Thanks very much
>>>>
>>>> Best regards
>>>> zachary
>>>>
>>>
>>>
>>
>
 
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Entire Thread (Showing 4 of 5)

  • Re: [GDAC-users] Re: [cga-webmaster] help Hailei Zhang <hidden>

    Hi zachary, The CIMP status was not provided in our website. You can download methylation data from our website and figure it out by your self. The methylation platform was illunina HumanMethylation450